Monthly Archives: March 2018

VFB 2.0 beta release

We are proud to announce the release of VFB 2.0_beta1 designed in collaboration with MetaCell using the Geppetto open source platform. This release, available at https://v2.virtualflybrain.org, features:

  • An integrated 3D image browser that synchronises with the stack browser familiar from VFB 1.5
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    A redesigned stack browser with fast section scrolling controlled by mouse-wheel or trackpad.

  •  A stylish new look and feel with an internal windowing environment and rapid synchronisation between components.
  •  A redesigned query interface making queries clearer and more easily extendable.

VFB 2.0_beta1 does not have the full functionality of VFB 1.5. In particular queries of FlyBase annotations of expression and phenotypes are not yet integrated. We are currently working on tuning queries for these and plan to incorporate them into the next release, scheduled for the end of April.

We’re also very busy adding new data including:

  • a new template for the larval CNS with painted domains and registered neurons
  • re-imaged VT lines from Janelia
  • split-GAL4 line images from FlyLight (Janelia)
  • neuron reconstructions from EM data

We are very keen to get community feedback on this release – including bug reports, features requests or just general suggestions. Please use the feedback link on the new site or email us on support@virtualflybrain.org.

Please note that although new development is focussed on VFB 2.0, we will continue to maintain VFB 1.5 in parallel.

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Filed under New Content, New Feature, Website

WEBINAR: Exploring the brain of a fly

Title
Neuroscience is advancing at a tremendous pace: the generation of circuit level hypotheses is experiencing an accelerated growth and it is now accompanied by an unprecedented ability to visualise, manipulate and record from individual neurons, in vivo. In this webinar, you’ll learn about the latest technological advancements in how disparate, large-scale datasets can be integrated, visualized and linked to a knowledge base and curated literature in the context of the brain of the Drosophila. MetaCell, world leaders in software for neuroscience, is hosting a free, open webinar to present Virtual Fly Brain, a unique resource for Drosophila neuroscience to produce fly brain data-driven imaging, visualization and browsing, ultimately providing the data to generate circuit hypotheses and identify research tools to test them. VFB is a joint effort of the University of Cambridge, University of Edinburgh and EMBL-EBI – funded by the Wellcome Trust. With exceptional guest speakers from the Virtual Fly Brain project, you’ll learn how you could make the most of your neuroscience imaging data and use your browser to explore the anatomy and the intricate relationships inside a brain.

https://www.eventbrite.co.uk/e/webinar-exploring-the-brain-of-a-fly-registration-43694256698

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Filed under Uncategorized, Usage Examples